.env.example

@@ -1,17 +1,17 @@
 # ============================================================================
-# ForensicPathways Environment Configuration
+# ForensicPathways Environment Configuration - COMPLETE
 # ============================================================================
 # Copy this file to .env and adjust the values below.
-# Settings are ordered by likelihood of needing adjustment during setup.
+# This file covers ALL environment variables used in the codebase.
 
 # ============================================================================
-# 1. CORE APPLICATION SETTINGS (REQUIRED - ADJUST FOR YOUR SETUP)
+# 1. CORE APPLICATION SETTINGS (REQUIRED)
 # ============================================================================
 
 # Your application's public URL (used for redirects and links)
 PUBLIC_BASE_URL=http://localhost:4321
 
-# Application environment (development, production, staging)
+# Application environment
 NODE_ENV=development
 
 # Secret key for session encryption (CHANGE IN PRODUCTION!)
@@ -22,19 +22,99 @@ AUTH_SECRET=your-secret-key-change-in-production-please
 # ============================================================================
 
 # Main AI Analysis Service (for query processing and recommendations)
-# Example uses Mistral AI - adjust endpoint/model as needed
+# Examples: http://localhost:11434 (Ollama), https://api.mistral.ai, https://api.openai.com
-AI_ANALYZER_ENDPOINT=https://api.mistral.ai/v1
+AI_ANALYZER_ENDPOINT=https://api.mistral.ai/v1/chat/completions
-AI_ANALYZER_API_KEY=your-mistral-api-key-here
+AI_ANALYZER_API_KEY=
-AI_ANALYZER_MODEL=mistral-small-latest
+AI_ANALYZER_MODEL=mistral/mistral-small-latest
 
-# Vector Embeddings Service (for semantic search - can use same provider)
+# Vector Embeddings Service (for semantic search)
+# Leave API_KEY empty for Ollama, use actual key for cloud services
 AI_EMBEDDINGS_ENABLED=true
 AI_EMBEDDINGS_ENDPOINT=https://api.mistral.ai/v1/embeddings
-AI_EMBEDDINGS_API_KEY=your-mistral-api-key-here
+AI_EMBEDDINGS_API_KEY=
 AI_EMBEDDINGS_MODEL=mistral-embed
 
 # ============================================================================
-# 3. AUTHENTICATION (OPTIONAL - SET TO 'true' IF NEEDED)
+# 3. AI PIPELINE CONFIGURATION (CONTEXT & PERFORMANCE TUNING)
+# ============================================================================
+
+# === SIMILARITY SEARCH STAGE ===
+# How many similar tools/concepts embeddings search returns as candidates
+# 🔍 This is the FIRST filter - vector similarity matching
+# Lower = faster, less comprehensive | Higher = slower, more comprehensive
+AI_EMBEDDING_CANDIDATES=40
+
+# Minimum similarity score threshold (0.0-1.0)
+# Lower = more results but less relevant | Higher = fewer but more relevant
+AI_SIMILARITY_THRESHOLD=0.3
+
+# === AI SELECTION STAGE ===
+# Maximum tools the AI can select from embedding candidates
+# 🤖 This is the SECOND filter - AI intelligent selection
+# Should be ≤ AI_EMBEDDING_CANDIDATES
+AI_MAX_SELECTED_ITEMS=25
+
+# Maximum tools sent to AI for detailed analysis (micro-tasks)
+# 📋 This is the FINAL context size sent to AI models
+# Lower = less AI context, faster responses | Higher = more context, slower
+AI_MAX_TOOLS_TO_ANALYZE=20
+
+# Maximum concepts sent to AI for background knowledge selection
+# 📚 Concepts are smaller than tools, so can be higher
+AI_MAX_CONCEPTS_TO_ANALYZE=10
+
+# === CONTEXT FLOW SUMMARY ===
+# 1. Vector Search: 111 total tools → AI_EMBEDDING_CANDIDATES (40) most similar
+# 2. AI Selection: 40 candidates → AI_MAX_SELECTED_ITEMS (25) best matches  
+# 3. AI Analysis: 25 selected → AI_MAX_TOOLS_TO_ANALYZE (20) for micro-tasks
+# 4. Final Output: Recommendations based on analyzed subset
+
+# ============================================================================
+# 4. AI PERFORMANCE & RATE LIMITING
+# ============================================================================
+
+# === USER RATE LIMITS (per minute) ===
+# Main queries per user per minute
+AI_RATE_LIMIT_MAX_REQUESTS=4
+
+# Total AI micro-task calls per user per minute (across all micro-tasks)
+AI_MICRO_TASK_TOTAL_LIMIT=30
+
+# === PIPELINE TIMING ===
+# Delay between micro-tasks within a single query (milliseconds)
+# Higher = gentler on AI service | Lower = faster responses
+AI_MICRO_TASK_DELAY_MS=500
+
+# Delay between queued requests (milliseconds)
+AI_RATE_LIMIT_DELAY_MS=2000
+
+# === EMBEDDINGS BATCH PROCESSING ===
+# How many embeddings to generate per API call
+AI_EMBEDDINGS_BATCH_SIZE=10
+
+# Delay between embedding batches (milliseconds)
+AI_EMBEDDINGS_BATCH_DELAY_MS=1000
+
+# ============================================================================
+# 5. AI CONTEXT & TOKEN MANAGEMENT
+# ============================================================================
+
+# Maximum context tokens to maintain across micro-tasks
+# Controls how much conversation history is preserved between AI calls
+AI_MAX_CONTEXT_TOKENS=3000
+
+# Maximum tokens per individual AI prompt
+# Larger = more context per call | Smaller = faster responses
+AI_MAX_PROMPT_TOKENS=1200
+
+# Timeout for individual micro-tasks (milliseconds)
+AI_MICRO_TASK_TIMEOUT_MS=25000
+
+# Maximum size of the processing queue
+AI_QUEUE_MAX_SIZE=50
+
+# ============================================================================
+# 6. AUTHENTICATION & AUTHORIZATION (OPTIONAL)
 # ============================================================================
 
 # Enable authentication for different features
@@ -48,30 +128,47 @@ OIDC_CLIENT_ID=your-client-id
 OIDC_CLIENT_SECRET=your-client-secret
 
 # ============================================================================
-# 4. ADVANCED AI CONFIGURATION (FINE-TUNING - DEFAULT VALUES USUALLY WORK)
+# 7. FILE UPLOADS - NEXTCLOUD INTEGRATION (OPTIONAL)
 # ============================================================================
 
-# Pipeline Performance Settings
+# Nextcloud server for file uploads (knowledgebase contributions)
-AI_MAX_SELECTED_ITEMS=60                    # Tools analyzed per micro-task
+# Leave empty to disable file upload functionality
-AI_EMBEDDING_CANDIDATES=60                  # Vector search candidates
+NEXTCLOUD_ENDPOINT=https://your-nextcloud.com
-AI_MICRO_TASK_DELAY_MS=500                  # Delay between AI micro-tasks
 
-# Rate Limiting (requests per minute)
+# Nextcloud credentials (app password recommended)
-AI_RATE_LIMIT_MAX_REQUESTS=6               # Main query rate limit
+NEXTCLOUD_USERNAME=your-username
-AI_MICRO_TASK_RATE_LIMIT=15                # Micro-task rate limit
+NEXTCLOUD_PASSWORD=your-app-password
-AI_RATE_LIMIT_DELAY_MS=3000                # Delay between rate-limited calls
 
-# Embeddings Batch Processing
+# Upload directory on Nextcloud (will be created if doesn't exist)
-AI_EMBEDDINGS_BATCH_SIZE=20                 # Embeddings processed per batch
+NEXTCLOUD_UPLOAD_PATH=/kb-media
-AI_EMBEDDINGS_BATCH_DELAY_MS=1000          # Delay between embedding batches
 
-# Timeouts and Limits
+# Public URL base for sharing uploaded files
-AI_MICRO_TASK_TIMEOUT_MS=25000             # Max time per micro-task
+# Usually your Nextcloud base URL + share path
-AI_QUEUE_MAX_SIZE=50                       # Max queued requests
+NEXTCLOUD_PUBLIC_URL=https://your-nextcloud.com/s/
-AI_SIMILARITY_THRESHOLD=0.3                # Vector similarity threshold
 
 # ============================================================================
-# 5. FORENSIC AUDIT SYSTEM (OPTIONAL - FOR TRANSPARENCY AND DEBUGGING)
+# 8. GIT CONTRIBUTIONS - ISSUE CREATION (OPTIONAL)
+# ============================================================================
+
+# Git provider: gitea, github, or gitlab
+GIT_PROVIDER=gitea
+
+# Repository URL (used to extract owner/name)
+# Example: https://git.example.com/owner/forensic-pathways.git
+GIT_REPO_URL=https://git.example.com/owner/forensic-pathways.git
+
+# API endpoint for your git provider
+# Gitea: https://git.example.com/api/v1
+# GitHub: https://api.github.com
+# GitLab: https://gitlab.example.com/api/v4
+GIT_API_ENDPOINT=https://git.example.com/api/v1
+
+# Personal access token or API token for creating issues
+# Generate this in your git provider's settings
+GIT_API_TOKEN=your-git-api-token
+
+# ============================================================================
+# 9. AUDIT & DEBUGGING (OPTIONAL)
 # ============================================================================
 
 # Enable detailed audit trail of AI decision-making
@@ -80,38 +177,49 @@ FORENSIC_AUDIT_ENABLED=false
 # Audit detail level: minimal, standard, verbose
 FORENSIC_AUDIT_DETAIL_LEVEL=standard
 
-# Audit retention and limits
+# Audit retention time (hours)
-FORENSIC_AUDIT_RETENTION_HOURS=72          # Keep audit data for 3 days
+FORENSIC_AUDIT_RETENTION_HOURS=24
-FORENSIC_AUDIT_MAX_ENTRIES=50              # Max entries per request
+
+# Maximum audit entries per request
+FORENSIC_AUDIT_MAX_ENTRIES=50
+
+# Enable detailed AI pipeline logging
+AI_PIPELINE_DEBUG=false
+
+# Enable performance metrics collection
+AI_PERFORMANCE_METRICS=false
+
+# Enable detailed micro-task debugging
+AI_MICRO_TASK_DEBUG=false
 
 # ============================================================================
-# 6. QUALITY CONTROL AND BIAS DETECTION (OPTIONAL - ADVANCED FEATURES)
+# 10. QUALITY CONTROL & BIAS DETECTION (ADVANCED)
 # ============================================================================
 
-# Confidence Scoring Weights (must sum to 1.0)
+# Confidence scoring weights (must sum to 1.0)
 CONFIDENCE_EMBEDDINGS_WEIGHT=0.3
 CONFIDENCE_CONSENSUS_WEIGHT=0.25
 CONFIDENCE_DOMAIN_MATCH_WEIGHT=0.25
 CONFIDENCE_FRESHNESS_WEIGHT=0.2
 
-# Confidence Thresholds (0-100)
+# Confidence thresholds (0-100)
 CONFIDENCE_MINIMUM_THRESHOLD=40
 CONFIDENCE_MEDIUM_THRESHOLD=60
 CONFIDENCE_HIGH_THRESHOLD=80
 
-# Bias Detection Settings
+# Bias detection settings
 BIAS_DETECTION_ENABLED=false
-BIAS_POPULARITY_THRESHOLD=0.7              # Detect over-popular tools
+BIAS_POPULARITY_THRESHOLD=0.7
-BIAS_DIVERSITY_MINIMUM=0.6                 # Require recommendation diversity
+BIAS_DIVERSITY_MINIMUM=0.6
-BIAS_CELEBRITY_TOOLS="Volatility 3,Wireshark,Autopsy,Maltego"
+BIAS_CELEBRITY_TOOLS=""
 
-# Quality Control Thresholds
+# Quality control thresholds
-QUALITY_MIN_RESPONSE_LENGTH=50             # Minimum AI response length
+QUALITY_MIN_RESPONSE_LENGTH=50
-QUALITY_MIN_SELECTION_COUNT=1              # Minimum tools selected
+QUALITY_MIN_SELECTION_COUNT=1
-QUALITY_MAX_PROCESSING_TIME_MS=30000       # Max processing time
+QUALITY_MAX_PROCESSING_TIME_MS=30000
 
 # ============================================================================
-# 7. USER INTERFACE PREFERENCES (OPTIONAL - UI DEFAULTS)
+# 11. USER INTERFACE DEFAULTS (OPTIONAL)
 # ============================================================================
 
 # Default UI behavior (users can override)
@@ -121,34 +229,76 @@ UI_SHOW_BIAS_WARNINGS=true
 UI_AUDIT_TRAIL_COLLAPSIBLE=true
 
 # ============================================================================
-# 8. EXTERNAL INTEGRATIONS (OPTIONAL - ONLY IF USING THESE SERVICES)
+# 12. CACHING & PERFORMANCE (OPTIONAL)
 # ============================================================================
 
-# Nextcloud Integration (for file uploads)
+# Cache AI responses (milliseconds)
-# NEXTCLOUD_ENDPOINT=https://your-nextcloud.com
+AI_RESPONSE_CACHE_TTL_MS=3600000
-# NEXTCLOUD_USERNAME=your-username
+
-# NEXTCLOUD_PASSWORD=your-password
+# Queue cleanup interval (milliseconds)
-# NEXTCLOUD_UPLOAD_PATH=/kb-media
+AI_QUEUE_CLEANUP_INTERVAL_MS=300000
-# NEXTCLOUD_PUBLIC_URL=https://your-nextcloud.com/s/
 
 # ============================================================================
-# 9. PERFORMANCE AND MONITORING (OPTIONAL - FOR PRODUCTION OPTIMIZATION)
+# PERFORMANCE TUNING PRESETS
 # ============================================================================
 
-# Caching and Queue Management
+# 🚀 FOR FASTER RESPONSES (less comprehensive):
-AI_RESPONSE_CACHE_TTL_MS=3600000           # Cache responses for 1 hour
+# AI_EMBEDDING_CANDIDATES=20
-AI_QUEUE_CLEANUP_INTERVAL_MS=300000        # Cleanup queue every 5 minutes
+# AI_MAX_SELECTED_ITEMS=15  
+# AI_MAX_TOOLS_TO_ANALYZE=10
+# AI_MICRO_TASK_DELAY_MS=200
+# AI_MAX_CONTEXT_TOKENS=2000
 
-# Debug and Monitoring
+# 🎯 FOR BETTER QUALITY (more comprehensive):
-AI_MICRO_TASK_DEBUG=false                  # Enable detailed micro-task logging
+# AI_EMBEDDING_CANDIDATES=60
-AI_PERFORMANCE_METRICS=false               # Enable performance tracking
+# AI_MAX_SELECTED_ITEMS=40
+# AI_MAX_TOOLS_TO_ANALYZE=30
+# AI_MICRO_TASK_DELAY_MS=800
+# AI_MAX_CONTEXT_TOKENS=4000
+
+# 🔋 FOR LOW-POWER SYSTEMS (minimal resources):
+# AI_EMBEDDING_CANDIDATES=15
+# AI_MAX_SELECTED_ITEMS=10
+# AI_MAX_TOOLS_TO_ANALYZE=8
+# AI_RATE_LIMIT_MAX_REQUESTS=2
+# AI_MICRO_TASK_DELAY_MS=1000
 
 # ============================================================================
-# SETUP CHECKLIST:
+# FEATURE COMBINATIONS GUIDE
 # ============================================================================
-# 1. Set PUBLIC_BASE_URL to your domain
+
-# 2. Change AUTH_SECRET to a secure random string
+# 📝 BASIC SETUP (AI only):
-# 3. Configure AI service endpoints and API keys
+# - Configure AI_ANALYZER_* and AI_EMBEDDINGS_*
-# 4. Set authentication options if needed
+# - Leave authentication, file uploads, and git disabled
-# 5. Test with default advanced settings before adjusting
+
+# 🔐 WITH AUTHENTICATION:
+# - Set AUTHENTICATION_NECESSARY_* to true
+# - Configure OIDC_* settings
+
+# 📁 WITH FILE UPLOADS:
+# - Configure all NEXTCLOUD_* settings
+# - Test connection before enabling in UI
+
+# 🔄 WITH CONTRIBUTIONS:
+# - Configure all GIT_* settings
+# - Test API token permissions for issue creation
+
+# 🔍 WITH FULL MONITORING:
+# - Enable FORENSIC_AUDIT_ENABLED=true
+# - Enable AI_PIPELINE_DEBUG=true
+# - Configure audit retention and detail level
+
+# ============================================================================
+# SETUP CHECKLIST
+# ============================================================================
+# ✅ 1. Set PUBLIC_BASE_URL to your domain
+# ✅ 2. Change AUTH_SECRET to a secure random string  
+# ✅ 3. Configure AI endpoints (Ollama: leave API_KEY empty)
+# ✅ 4. Start with default AI values, tune based on performance
+# ✅ 5. Enable authentication if needed (configure OIDC)
+# ✅ 6. Configure Nextcloud if file uploads needed
+# ✅ 7. Configure Git provider if contributions needed
+# ✅ 8. Test with a simple query to verify pipeline works
+# ✅ 9. Enable audit trail for transparency if desired
+# ✅ 10. Tune performance settings based on usage patterns
 # ============================================================================

src/pages/api/ai/enhance-input.ts

@@ -1,4 +1,5 @@
-// src/pages/api/ai/enhance-input.ts - ENHANCED with forensics methodology
+// src/pages/api/ai/enhance-input.ts - Enhanced AI service compatibility
+
 import type { APIRoute } from 'astro';
 import { withAPIAuth } from '../../../utils/auth.js';
 import { apiError, apiServerError, createAuthErrorResponse } from '../../../utils/api.js';
@@ -93,6 +94,45 @@ ${input}
   `.trim();
 }
 
+// Enhanced AI service call function
+async function callAIService(prompt: string): Promise<Response> {
+  const endpoint = AI_ENDPOINT;
+  const apiKey = AI_ANALYZER_API_KEY;
+  const model = AI_ANALYZER_MODEL;
+  
+  // Simple headers - add auth only if API key exists
+  let headers: Record<string, string> = {
+    'Content-Type': 'application/json'
+  };
+  
+  // Add authentication if API key is provided
+  if (apiKey) {
+    headers['Authorization'] = `Bearer ${apiKey}`;
+    console.log('[ENHANCE API] Using API key authentication');
+  } else {
+    console.log('[ENHANCE API] No API key - making request without authentication');
+  }
+  
+  // Simple request body
+  const requestBody = {
+    model,
+    messages: [{ role: 'user', content: prompt }],
+    max_tokens: 300,
+    temperature: 0.7,
+    top_p: 0.9,
+    frequency_penalty: 0.2,
+    presence_penalty: 0.1
+  };
+  
+  // FIXED: This function is already being called through enqueueApiCall in the main handler
+  // So we can use direct fetch here since the queuing happens at the caller level
+  return fetch(`${endpoint}/v1/chat/completions`, {
+    method: 'POST',
+    headers,
+    body: JSON.stringify(requestBody)
+  });
+}
+
 export const POST: APIRoute = async ({ request }) => {
   try {
     const authResult = await withAPIAuth(request, 'ai');
@@ -121,31 +161,11 @@ export const POST: APIRoute = async ({ request }) => {
     const systemPrompt = createEnhancementPrompt(sanitizedInput);
     const taskId = `enhance_${userId}_${Date.now()}_${Math.random().toString(36).substr(2, 4)}`;
     
-    const aiResponse = await enqueueApiCall(() =>
+    const aiResponse = await enqueueApiCall(() => callAIService(systemPrompt), taskId);
-      fetch(`${AI_ENDPOINT}/v1/chat/completions`, {
-        method: 'POST',
-        headers: {
-          'Content-Type': 'application/json',
-          'Authorization': `Bearer ${AI_ANALYZER_API_KEY}`
-        },
-        body: JSON.stringify({
-          model: AI_ANALYZER_MODEL,
-          messages: [
-            {
-              role: 'user',
-              content: systemPrompt
-            }
-          ],
-          max_tokens: 300,
-          temperature: 0.7,
-          top_p: 0.9,
-          frequency_penalty: 0.2,
-          presence_penalty: 0.1
-        })
-      }), taskId);
 
     if (!aiResponse.ok) {
-      console.error('AI enhancement error:', await aiResponse.text());
+      const errorText = await aiResponse.text();
+      console.error('[ENHANCE API] AI enhancement error:', errorText, 'Status:', aiResponse.status);
       return apiServerError.unavailable('Enhancement service unavailable');
     }
 
@@ -188,7 +208,7 @@ export const POST: APIRoute = async ({ request }) => {
       questions = [];
     }
 
-    console.log(`[AI Enhancement] User: ${userId}, Forensics Questions: ${questions.length}, Input length: ${sanitizedInput.length}`);
+    console.log(`[ENHANCE API] User: ${userId}, Forensics Questions: ${questions.length}, Input length: ${sanitizedInput.length}`);
 
     return new Response(JSON.stringify({
       success: true,

src/utils/aiPipeline.ts

@@ -66,6 +66,11 @@ interface AnalysisContext {
   auditTrail: AuditEntry[];
 }
 
+interface SimilarityResult extends EmbeddingData {
+  similarity: number;
+}
+
+
 class ImprovedMicroTaskAIPipeline {
   private config: AIConfig;
   private maxSelectedItems: number;
@@ -267,39 +272,62 @@ class ImprovedMicroTaskAIPipeline {
         userQuery, 
         this.embeddingCandidates, 
         this.similarityThreshold
-      );
+      ) as SimilarityResult[]; // Type assertion for similarity property
       
-      const toolNames = new Set<string>();
+      console.log(`[IMPROVED PIPELINE] Embeddings found ${similarItems.length} similar items`);
-      const conceptNames = new Set<string>();
       
-      similarItems.forEach(item => {
+      // FIXED: Create lookup maps for O(1) access while preserving original data
-        if (item.type === 'tool') toolNames.add(item.name);
+      const toolsMap = new Map<string, any>(toolsData.tools.map((tool: any) => [tool.name, tool]));
-        if (item.type === 'concept') conceptNames.add(item.name);
+      const conceptsMap = new Map<string, any>(toolsData.concepts.map((concept: any) => [concept.name, concept]));
+      
+      // FIXED: Process in similarity order, preserving the ranking
+      const similarTools = similarItems
+        .filter((item): item is SimilarityResult => item.type === 'tool')
+        .map(item => toolsMap.get(item.name))
+        .filter((tool): tool is any => tool !== undefined); // Proper type guard
+      
+      const similarConcepts = similarItems
+        .filter((item): item is SimilarityResult => item.type === 'concept')
+        .map(item => conceptsMap.get(item.name))
+        .filter((concept): concept is any => concept !== undefined); // Proper type guard
+      
+      console.log(`[IMPROVED PIPELINE] Similarity-ordered results: ${similarTools.length} tools, ${similarConcepts.length} concepts`);
+      
+      // Log the first few tools to verify ordering is preserved
+      if (similarTools.length > 0) {
+        console.log(`[IMPROVED PIPELINE] Top similar tools (in similarity order):`);
+        similarTools.slice(0, 5).forEach((tool, idx) => {
+          const originalSimilarItem = similarItems.find(item => item.name === tool.name);
+          console.log(`  ${idx + 1}. ${tool.name} (similarity: ${originalSimilarItem?.similarity?.toFixed(4) || 'N/A'})`);
         });
+      }
       
-      console.log(`[IMPROVED PIPELINE] Embeddings found: ${toolNames.size} tools, ${conceptNames.size} concepts`);
+      if (similarTools.length >= 15) {
-      
+        candidateTools = similarTools;
-      if (toolNames.size >= 15) {
+        candidateConcepts = similarConcepts;
-        candidateTools = toolsData.tools.filter((tool: any) => toolNames.has(tool.name));
-        candidateConcepts = toolsData.concepts.filter((concept: any) => conceptNames.has(concept.name));
         selectionMethod = 'embeddings_candidates';
         
-        console.log(`[IMPROVED PIPELINE] Using embeddings candidates: ${candidateTools.length} tools`);
+        console.log(`[IMPROVED PIPELINE] Using embeddings candidates in similarity order: ${candidateTools.length} tools`);
       } else {
-        console.log(`[IMPROVED PIPELINE] Embeddings insufficient (${toolNames.size} < 15), using full dataset`);
+        console.log(`[IMPROVED PIPELINE] Embeddings insufficient (${similarTools.length} < 15), using full dataset`);
         candidateTools = toolsData.tools;
         candidateConcepts = toolsData.concepts;
         selectionMethod = 'full_dataset';
       }
       
-      // NEW: Add Audit Entry for Embeddings Search
+      // NEW: Add Audit Entry for Embeddings Search with ordering verification
       if (this.auditConfig.enabled) {
         this.addAuditEntry(null, 'retrieval', 'embeddings-search', 
           { query: userQuery, threshold: this.similarityThreshold, candidates: this.embeddingCandidates }, 
-          { candidatesFound: similarItems.length, toolNames: Array.from(toolNames), conceptNames: Array.from(conceptNames) },
+          { 
-          similarItems.length >= 15 ? 85 : 60, // Confidence based on result quality
+            candidatesFound: similarItems.length, 
+            toolsInOrder: similarTools.slice(0, 3).map((t: any) => t.name),
+            conceptsInOrder: similarConcepts.slice(0, 3).map((c: any) => c.name),
+            orderingPreserved: true
+          },
+          similarTools.length >= 15 ? 85 : 60,
           embeddingsStart,
-          { selectionMethod, embeddingsEnabled: true }
+          { selectionMethod, embeddingsEnabled: true, orderingFixed: true }
         );
       }
     } else {
@@ -309,7 +337,7 @@ class ImprovedMicroTaskAIPipeline {
       selectionMethod = 'full_dataset';
     }
 
-    console.log(`[IMPROVED PIPELINE] AI will analyze FULL DATA of ${candidateTools.length} candidate tools`);
+    console.log(`[IMPROVED PIPELINE] AI will analyze ${candidateTools.length} candidate tools (ordering preserved: ${selectionMethod === 'embeddings_candidates'})`);
     const finalSelection = await this.aiSelectionWithFullData(userQuery, candidateTools, candidateConcepts, mode, selectionMethod);
     
     return {
@@ -735,22 +763,42 @@ ${JSON.stringify(conceptsWithFullData.slice(0, 10), null, 2)}`;
   }
 
   private async callAI(prompt: string, maxTokens: number = 1000): Promise<string> {
-    const response = await fetch(`${this.config.endpoint}/v1/chat/completions`, {
+    const endpoint = this.config.endpoint;
-      method: 'POST',
+    const apiKey = this.config.apiKey;
-      headers: {
+    const model = this.config.model;
-        'Content-Type': 'application/json',
+    
-        'Authorization': `Bearer ${this.config.apiKey}`
+    // Simple headers - add auth only if API key exists
-      },
+    let headers: Record<string, string> = {
-      body: JSON.stringify({
+      'Content-Type': 'application/json'
-        model: this.config.model,
+    };
+    
+    // Add authentication if API key is provided
+    if (apiKey) {
+      headers['Authorization'] = `Bearer ${apiKey}`;
+      console.log('[AI PIPELINE] Using API key authentication');
+    } else {
+      console.log('[AI PIPELINE] No API key - making request without authentication');
+    }
+    
+    // Simple request body
+    const requestBody = {
+      model,
       messages: [{ role: 'user', content: prompt }],
       max_tokens: maxTokens,
       temperature: 0.3
-      })
+    };
+    
+    try {
+      // FIXED: Use direct fetch since entire pipeline is already queued at query.ts level
+      const response = await fetch(`${endpoint}/v1/chat/completions`, {
+        method: 'POST',
+        headers,
+        body: JSON.stringify(requestBody)
       });
 
       if (!response.ok) {
         const errorText = await response.text();
+        console.error(`[AI PIPELINE] AI API Error ${response.status}:`, errorText);
         throw new Error(`AI API error: ${response.status} - ${errorText}`);
       }
 
@@ -758,10 +806,16 @@ ${JSON.stringify(conceptsWithFullData.slice(0, 10), null, 2)}`;
       const content = data.choices?.[0]?.message?.content;
       
       if (!content) {
+        console.error('[AI PIPELINE] No response content:', data);
         throw new Error('No response from AI model');
       }
 
       return content;
+      
+    } catch (error) {
+      console.error('[AI PIPELINE] AI service call failed:', error.message);
+      throw error;
+    }
   }
 
   async processQuery(userQuery: string, mode: string): Promise<AnalysisResult> {

src/utils/embeddings.ts

@@ -24,6 +24,10 @@ interface EmbeddingsDatabase {
   embeddings: EmbeddingData[];
 }
 
+interface SimilarityResult extends EmbeddingData {
+  similarity: number;
+}
+
 class EmbeddingsService {
   private embeddings: EmbeddingData[] = [];
   private isInitialized = false;
@@ -211,8 +215,9 @@ class EmbeddingsService {
     return dotProduct / (Math.sqrt(normA) * Math.sqrt(normB));
   }
 
-  async findSimilar(query: string, maxResults: number = 30, threshold: number = 0.3): Promise<EmbeddingData[]> {
+  async findSimilar(query: string, maxResults: number = 30, threshold: number = 0.3): Promise<SimilarityResult[]> {
     if (!this.enabled || !this.isInitialized || this.embeddings.length === 0) {
+      console.log('[EMBEDDINGS] Service not available for similarity search');
       return [];
     }
 
@@ -221,18 +226,51 @@ class EmbeddingsService {
       const queryEmbeddings = await this.generateEmbeddingsBatch([query.toLowerCase()]);
       const queryEmbedding = queryEmbeddings[0];
 
-      // Calculate similarities
+      console.log(`[EMBEDDINGS] Computing similarities for ${this.embeddings.length} items`);
-      const similarities = this.embeddings.map(item => ({
+
+      // Calculate similarities - properly typed
+      const similarities: SimilarityResult[] = this.embeddings.map(item => ({
         ...item,
         similarity: this.cosineSimilarity(queryEmbedding, item.embedding)
       }));
 
-      // Filter by threshold and sort by similarity
+      // Filter by threshold and sort by similarity (descending - highest first)
-      return similarities
+      const results = similarities
         .filter(item => item.similarity >= threshold)
-        .sort((a, b) => b.similarity - a.similarity)
+        .sort((a, b) => b.similarity - a.similarity) // CRITICAL: Ensure descending order
         .slice(0, maxResults);
 
+      // ENHANCED: Verify ordering is correct
+      const orderingValid = results.every((item, index) => {
+        if (index === 0) return true;
+        return item.similarity <= results[index - 1].similarity;
+      });
+
+      if (!orderingValid) {
+        console.error('[EMBEDDINGS] CRITICAL: Similarity ordering is broken!');
+        results.forEach((item, idx) => {
+          console.error(`  ${idx}: ${item.name} = ${item.similarity.toFixed(4)}`);
+        });
+      }
+
+      // ENHANCED: Log top results for debugging
+      console.log(`[EMBEDDINGS] Found ${results.length} similar items (threshold: ${threshold})`);
+      if (results.length > 0) {
+        console.log('[EMBEDDINGS] Top 5 similarity matches:');
+        results.slice(0, 5).forEach((item, idx) => {
+          console.log(`  ${idx + 1}. ${item.name} (${item.type}) = ${item.similarity.toFixed(4)}`);
+        });
+        
+        // Verify first result is indeed the highest
+        const topSimilarity = results[0].similarity;
+        const hasHigherSimilarity = results.some(item => item.similarity > topSimilarity);
+        if (hasHigherSimilarity) {
+          console.error('[EMBEDDINGS] CRITICAL: Top result is not actually the highest similarity!');
+        }
+      }
+
+      return results;
+
     } catch (error) {
       console.error('[EMBEDDINGS] Failed to find similar items:', error);
       return [];
@@ -257,7 +295,7 @@ class EmbeddingsService {
 // Global instance
 const embeddingsService = new EmbeddingsService();
 
-export { embeddingsService, type EmbeddingData };
+export { embeddingsService, type EmbeddingData, type SimilarityResult };
 
 // Auto-initialize on import in server environment
 if (typeof window === 'undefined' && process.env.NODE_ENV !== 'test') {