fix categorization ui update errors

- remove old listeners when updating treecell item.  cleanup GroupTreeCell
- invalidateHashSetHitsCount before adding/removing files to make sure it is seen during listner involation
- cleanup GroupTreeItem and NavPanel
- add comment to GroupManager

ImageGallery/src/org/sleuthkit/autopsy/imagegallery/grouping/DrawableGroup.java

@@ -25,14 +25,12 @@ import javafx.collections.FXCollections;
 import javafx.collections.ObservableList;
 import org.sleuthkit.autopsy.coreutils.Logger;
 import org.sleuthkit.autopsy.imagegallery.ImageGalleryController;
-import org.sleuthkit.datamodel.BlackboardArtifact;
-import org.sleuthkit.datamodel.TskCoreException;
 
 /**
  * Represents a set of image/video files in a group. The UI listens to changes
  * to the group membership and updates itself accordingly.
  */
-public class DrawableGroup implements Comparable<DrawableGroup>{
+public class DrawableGroup implements Comparable<DrawableGroup> {
 
     private static final Logger LOGGER = Logger.getLogger(DrawableGroup.class.getName());
 
@@ -69,7 +67,7 @@ public class DrawableGroup implements Comparable<DrawableGroup>{
      * Call to indicate that an image has been added or removed from the group,
      * so the hash counts may not longer be accurate.
      */
-    synchronized public void invalidateHashSetHitsCount(){
+    synchronized public void invalidateHashSetHitsCount() {
         filesWithHashSetHitsCount = -1;
     }
 
@@ -80,7 +78,7 @@ public class DrawableGroup implements Comparable<DrawableGroup>{
             for (Long fileID : fileIds()) {
 
                 try {
-                    if(ImageGalleryController.getDefault().getDatabase().isInHashSet(fileID)){
+                    if (ImageGalleryController.getDefault().getDatabase().isInHashSet(fileID)) {
                         filesWithHashSetHitsCount++;
                     }
                 } catch (IllegalStateException | NullPointerException ex) {
@@ -117,20 +115,20 @@ public class DrawableGroup implements Comparable<DrawableGroup>{
     }
 
     synchronized public void addFile(Long f) {
+        invalidateHashSetHitsCount();
         if (fileIDs.contains(f) == false) {
             fileIDs.add(f);
         }
-        invalidateHashSetHitsCount();
     }
 
     synchronized public void removeFile(Long f) {
-        fileIDs.removeAll(f);
         invalidateHashSetHitsCount();
+        fileIDs.removeAll(f);
     }
 
     // By default, sort by group key name
     @Override
-    public int compareTo(DrawableGroup other){
+    public int compareTo(DrawableGroup other) {
         return this.groupKey.getValueDisplayName().compareTo(other.groupKey.getValueDisplayName());
     }
 }

ImageGallery/src/org/sleuthkit/autopsy/imagegallery/grouping/GroupManager.java

@@ -283,7 +283,9 @@ public class GroupManager implements FileUpdateEvent.FileUpdateListener {
             group.removeFile(fileID);
 
             // If we're grouping by category, we don't want to remove empty groups.
-            if(! group.groupKey.getValueDisplayName().startsWith("CAT-")){
+            if (group.groupKey.getValueDisplayName().startsWith("CAT-")) {
+                return;
+            } else {
                 if (group.fileIds().isEmpty()) {
                     synchronized (groupMap) {
                         groupMap.remove(groupKey, group);
@@ -456,7 +458,7 @@ public class GroupManager implements FileUpdateEvent.FileUpdateListener {
             }
 
             return values;
-        } catch(TskCoreException ex){
+        } catch (TskCoreException ex) {
             LOGGER.log(Level.WARNING, "TSK error getting list of type " + groupBy.getDisplayName());
             return new ArrayList<A>();
         }
@@ -520,8 +522,11 @@ public class GroupManager implements FileUpdateEvent.FileUpdateListener {
      * Count the number of files with the given category.
      * This is faster than getFileIDsWithCategory and should be used if only the
      * counts are needed and not the file IDs.
+     *
      * @param category Category to match against
+     *
      * @return Number of files with the given category
+     *
      * @throws TskCoreException
      */
     public int countFilesWithCategory(Category category) throws TskCoreException {
@@ -581,7 +586,7 @@ public class GroupManager implements FileUpdateEvent.FileUpdateListener {
      */
     public <A extends Comparable<A>> void regroup(final DrawableAttribute<A> groupBy, final GroupSortBy sortBy, final SortOrder sortOrder, Boolean force) {
 
-        if(! Case.isCaseOpen()){
+        if (!Case.isCaseOpen()) {
             return;
         }
 
@@ -613,15 +618,11 @@ public class GroupManager implements FileUpdateEvent.FileUpdateListener {
         }
     }
 
-   
-
     /**
      * an executor to submit async ui related background tasks to.
      */
     final ExecutorService regroupExecutor = Executors.newSingleThreadExecutor(new BasicThreadFactory.Builder().namingPattern("ui task -%d").build());
 
-  
-
     public ReadOnlyDoubleProperty regroupProgress() {
         return regroupProgress.getReadOnlyProperty();
     }
@@ -630,6 +631,8 @@ public class GroupManager implements FileUpdateEvent.FileUpdateListener {
      * handle {@link FileUpdateEvent} sent from Db when files are
      * inserted/updated
      *
+     * TODO: why isn't this just two methods!
+     *
      * @param evt
      */
     @Override
@@ -646,7 +649,7 @@ public class GroupManager implements FileUpdateEvent.FileUpdateListener {
 
                         DrawableGroup g = getGroupForKey(gk);
 
-                        if (g == null){
+                        if (g == null) {
                             // It may be that this was the last unanalyzed file in the group, so test
                             // whether the group is now fully analyzed.
                             //TODO: use method in groupmanager ?
@@ -654,8 +657,7 @@ public class GroupManager implements FileUpdateEvent.FileUpdateListener {
                             if (checkAnalyzed != null) { // => the group is analyzed, so add it to the ui
                                 populateAnalyzedGroup(gk, checkAnalyzed);
                             }
-                        }     
+                        } else {
-                        else{
                             g.invalidateHashSetHitsCount();
                         }
                     }
@@ -698,13 +700,13 @@ public class GroupManager implements FileUpdateEvent.FileUpdateListener {
                         }
                     }
                 }
-
+                if (evt.getChangedAttribute() == DrawableAttribute.CATEGORY) {
                     Category.fireChange(fileIDs);
+                }
                 if (evt.getChangedAttribute() == DrawableAttribute.TAGS) {
                     TagUtils.fireChange(fileIDs);
                 }
                 break;
-            
         }
     }
 
@@ -789,7 +791,7 @@ public class GroupManager implements FileUpdateEvent.FileUpdateListener {
             Collections.sort(groups, sortBy.getGrpComparator(sortOrder));
 
             // Officially add all groups in order
-            for(DrawableGroup g:groups){
+            for (DrawableGroup g : groups) {
                 populateAnalyzedGroup(g, ReGroupTask.this);
             }
 

ImageGallery/src/org/sleuthkit/autopsy/imagegallery/gui/navpanel/GroupTreeCell.java

@@ -1,8 +1,28 @@
+/*
+ * Autopsy Forensic Browser
+ *
+ * Copyright 2013-15 Basis Technology Corp.
+ * Contact: carrier <at> sleuthkit <dot> org
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
 package org.sleuthkit.autopsy.imagegallery.gui.navpanel;
 
+import static java.util.Objects.isNull;
+import java.util.Optional;
 import javafx.application.Platform;
+import javafx.beans.InvalidationListener;
 import javafx.beans.Observable;
-import javafx.scene.Node;
 import javafx.scene.control.OverrunStyle;
 import javafx.scene.control.Tooltip;
 import javafx.scene.control.TreeCell;
@@ -13,103 +33,95 @@ import org.sleuthkit.autopsy.imagegallery.datamodel.DrawableAttribute;
 import org.sleuthkit.autopsy.imagegallery.grouping.DrawableGroup;
 
 /**
- * A {@link Node} in the tree that listens to its associated group. Manages
+ * A cell in the NavPanel tree that listens to its associated group's fileids.
- * visual representation of TreeNode in Tree. Listens to properties of group
+ * Manages visual representation of TreeNode in Tree. Listens to properties of
- * that don't impact hierarchy and updates ui to reflect them
+ * group that don't impact hierarchy and updates ui to reflect them
  */
 class GroupTreeCell extends TreeCell<TreeNode> {
 
     /**
      * icon to use if this cell's TreeNode doesn't represent a group but just a
-     * folder(with no DrawableFiles) in the hierarchy.
+     * folder(with no DrawableFiles) in the file system hierarchy.
      */
     private static final Image EMPTY_FOLDER_ICON = new Image("org/sleuthkit/autopsy/imagegallery/images/folder.png");
 
+    /**
+     * reference to listener that allows us to remove it from a group when a new
+     * group is assigned to this Cell
+     */
+    private InvalidationListener listener;
+
     public GroupTreeCell() {
+        //TODO: move this to .css file
         //adjust indent, default is 10 which uses up a lot of space.
         setStyle("-fx-indent:5;");
         //since end of path is probably more interesting put ellipsis at front
         setTextOverrun(OverrunStyle.LEADING_ELLIPSIS);
+        Platform.runLater(() -> {
+            prefWidthProperty().bind(getTreeView().widthProperty().subtract(15));
+        });
+
     }
 
     @Override
-    synchronized protected void updateItem(final TreeNode tNode, boolean empty) {
+    protected synchronized void updateItem(final TreeNode tNode, boolean empty) {
-        super.updateItem(tNode, empty);
+        //if there was a previous group, remove the listener
-        prefWidthProperty().bind(getTreeView().widthProperty().subtract(15));
+        Optional.ofNullable(getItem())
+                .map(TreeNode::getGroup)
+                .ifPresent((DrawableGroup t) -> {
+                    t.fileIds().removeListener(listener);
+                });
 
-        if (tNode == null || empty) {
+        super.updateItem(tNode, empty);
+
+        if (isNull(tNode) || empty) {
             Platform.runLater(() -> {
                 setTooltip(null);
                 setText(null);
                 setGraphic(null);
             });
         } else {
-            final String name = StringUtils.defaultIfBlank(tNode.getPath(), DrawableGroup.UNKNOWN);
+            final String groupName = StringUtils.defaultIfBlank(tNode.getPath(), DrawableGroup.UNKNOWN);
-            Platform.runLater(() -> {
-                setTooltip(new Tooltip(name));
-            });
 
-
+            if (isNull(tNode.getGroup())) {
-            if (tNode.getGroup() == null) {
+                //"dummy" group in file system tree <=>  a folder with no drawables
                 Platform.runLater(() -> {
-                    setText(name);
+                    setTooltip(new Tooltip(groupName));
+                    setText(groupName);
                     setGraphic(new ImageView(EMPTY_FOLDER_ICON));
                 });
 
             } else {
-                //if number of files in this group changes (eg file is recategorized), update counts
+                listener = (Observable o) -> {
-                tNode.getGroup().fileIds().addListener((Observable o) -> {
+                    final String countsText = getCountsText();
                     Platform.runLater(() -> {
-                        
+                        setText(groupName + countsText);
-                        String groupName; // The "name" variable set earlier is generally not correct at this point
-                        if((getItem() == null) || (getItem().getGroup() == null) ||
-                                (getItem().getGroup().groupKey == null)){
-                            groupName = "";
-                        }
-                        else{
-                            groupName = getItem().getGroup().groupKey.getValueDisplayName();
-                        }
-                        
-                        setText(groupName + " (" + getNumerator() + getDenominator() + ")");
-                    });
                     });
+                };
+                //if number of files in this group changes (eg file is recategorized), update counts via listener
+                tNode.getGroup().fileIds().addListener(listener);
 
-                Platform.runLater(() -> {
-                    //this TreeNode has a group so append counts to name ...
-                    setText(name + " (" + getNumerator() + getDenominator() + ")");
                 //... and use icon corresponding to group type
-                    setGraphic(new ImageView(tNode.getGroup().groupKey.getAttribute().getIcon()));
+                final Image icon = tNode.getGroup().groupKey.getAttribute().getIcon();
+                final String countsText = getCountsText();
+                Platform.runLater(() -> {
+                    setTooltip(new Tooltip(groupName));
+                    setGraphic(new ImageView(icon));
+                    setText(groupName + countsText);
                 });
-                
             }
         }
     }
 
-    /**
+    private synchronized String getCountsText() {
-     * @return the Numerator of the count to append to the group name = number
+        final String counts = Optional.ofNullable(getItem())
-     * of hashset hits + "/"
+                .map(TreeNode::getGroup)
-     */
+                .map((DrawableGroup t) -> {
-    synchronized private String getNumerator() {
+                    return " (" + ((t.groupKey.getAttribute() == DrawableAttribute.HASHSET)
-        try {
+                            ? Integer.toString(t.getSize())
-            final String numerator = (getItem().getGroup().groupKey.getAttribute() != DrawableAttribute.HASHSET)
+                            : t.getFilesWithHashSetHitsCount() + "/" + t.getSize()) + ")";
-                    ? getItem().getGroup().getFilesWithHashSetHitsCount() + "/"
+                }).orElse(""); //if item is null or group is null
-                    : "";
-            return numerator;
-        } catch (NullPointerException e) {
-            //instead of this try catch block, remove the listener when assigned a null treeitem / group
-            return "";
-        }
-    }
 
-    /**
+        return counts;
-     * @return the Denominator of the count to append to the group name = number
-     * of files in group
-     */
-    synchronized private Integer getDenominator() {
-        try {
-            return getItem().getGroup().getSize();
-        } catch (NullPointerException ex) {
-            return 0;
-        }
     }
 }

ImageGallery/src/org/sleuthkit/autopsy/imagegallery/gui/navpanel/GroupTreeItem.java

@@ -37,10 +37,28 @@ import org.sleuthkit.autopsy.imagegallery.grouping.DrawableGroup;
  */
 class GroupTreeItem extends TreeItem<TreeNode> implements Comparable<GroupTreeItem> {
 
+    static GroupTreeItem getTreeItemForGroup(GroupTreeItem root, DrawableGroup grouping) {
+        if (Objects.equals(root.getValue().getGroup(), grouping)) {
+            return root;
+        } else {
+            synchronized (root.getChildren()) {
+                for (TreeItem<TreeNode> child : root.getChildren()) {
+                    final GroupTreeItem childGTI = (GroupTreeItem) child;
+
+                    GroupTreeItem val = getTreeItemForGroup(childGTI, grouping);
+                    if (val != null) {
+                        return val;
+                    }
+                }
+            }
+        }
+        return null;
+    }
+
     /**
      * maps a path segment to the child item of this item with that path segment
      */
-    private Map<String, GroupTreeItem> childMap = new HashMap<>();
+    private final Map<String, GroupTreeItem> childMap = new HashMap<>();
     /**
      * the comparator if any used to sort the children of this item
      */
@@ -88,13 +106,10 @@ class GroupTreeItem extends TreeItem<TreeNode> implements Comparable<GroupTreeIt
 
                     prefixTreeItem = newTreeItem;
                     childMap.put(prefix, prefixTreeItem);
-                    Platform.runLater(new Runnable() {
+                    Platform.runLater(() -> {
-                        @Override
-                        public void run() {
                         synchronized (getChildren()) {
                             getChildren().add(newTreeItem);
                         }
-                        }
                     });
 
                 }
@@ -109,16 +124,13 @@ class GroupTreeItem extends TreeItem<TreeNode> implements Comparable<GroupTreeIt
                 newTreeItem.setExpanded(true);
                 childMap.put(path, newTreeItem);
 
-                Platform.runLater(new Runnable() {
+                Platform.runLater(() -> {
-                    @Override
-                    public void run() {
                     synchronized (getChildren()) {
                         getChildren().add(newTreeItem);
                         if (comp != null) {
                             FXCollections.sort(getChildren(), comp);
                         }
                     }
-                    }
                 });
 
             }
@@ -147,13 +159,10 @@ class GroupTreeItem extends TreeItem<TreeNode> implements Comparable<GroupTreeIt
                     prefixTreeItem = newTreeItem;
                     childMap.put(prefix, prefixTreeItem);
 
-                    Platform.runLater(new Runnable() {
+                    Platform.runLater(() -> {
-                        @Override
-                        public void run() {
                         synchronized (getChildren()) {
                             getChildren().add(newTreeItem);
                         }
-                        }
                     });
 
                 }
@@ -169,16 +178,13 @@ class GroupTreeItem extends TreeItem<TreeNode> implements Comparable<GroupTreeIt
                 newTreeItem.setExpanded(true);
                 childMap.put(path.get(0), newTreeItem);
 
-                Platform.runLater(new Runnable() {
+                Platform.runLater(() -> {
-                    @Override
-                    public void run() {
                     synchronized (getChildren()) {
                         getChildren().add(newTreeItem);
                         if (comp != null) {
                             FXCollections.sort(getChildren(), comp);
                         }
                     }
-                    }
                 });
             }
         }
@@ -189,24 +195,6 @@ class GroupTreeItem extends TreeItem<TreeNode> implements Comparable<GroupTreeIt
         return comp.compare(this, o);
     }
 
-    static GroupTreeItem getTreeItemForGroup(GroupTreeItem root, DrawableGroup grouping) {
-        if (Objects.equals(root.getValue().getGroup(), grouping)) {
-            return root;
-        } else {
-            synchronized (root.getChildren()) {
-                for (TreeItem<TreeNode> child : root.getChildren()) {
-                    final GroupTreeItem childGTI = (GroupTreeItem) child;
-
-                    GroupTreeItem val = getTreeItemForGroup(childGTI, grouping);
-                    if (val != null) {
-                        return val;
-                    }
-                }
-            }
-        }
-        return null;
-    }
-
     GroupTreeItem getTreeItemForPath(List<String> path) {
         // end of recursion
         if (path.isEmpty()) {
@@ -253,4 +241,5 @@ class GroupTreeItem extends TreeItem<TreeNode> implements Comparable<GroupTreeIt
             ti.resortChildren(comp);
         }
     }
+
 }

ImageGallery/src/org/sleuthkit/autopsy/imagegallery/gui/navpanel/NavPanel.java

@@ -1,7 +1,7 @@
 /*
  * Autopsy Forensic Browser
  *
- * Copyright 2013 Basis Technology Corp.
+ * Copyright 2013-15 Basis Technology Corp.
  * Contact: carrier <at> sleuthkit <dot> org
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
@@ -20,7 +20,6 @@ package org.sleuthkit.autopsy.imagegallery.gui.navpanel;
 
 import java.net.URL;
 import java.util.Arrays;
-import java.util.Collection;
 import java.util.List;
 import java.util.ResourceBundle;
 import javafx.application.Platform;
@@ -41,23 +40,21 @@ import javafx.scene.control.TreeView;
 import javafx.scene.layout.Priority;
 import javafx.scene.layout.VBox;
 import org.apache.commons.lang3.StringUtils;
-import org.openide.util.Exceptions;
 import org.sleuthkit.autopsy.coreutils.ThreadConfined;
 import org.sleuthkit.autopsy.coreutils.ThreadConfined.ThreadType;
 import org.sleuthkit.autopsy.imagegallery.FXMLConstructor;
 import org.sleuthkit.autopsy.imagegallery.ImageGalleryController;
 import org.sleuthkit.autopsy.imagegallery.datamodel.DrawableAttribute;
-import org.sleuthkit.autopsy.imagegallery.datamodel.DrawableFile;
 import org.sleuthkit.autopsy.imagegallery.grouping.DrawableGroup;
-import org.sleuthkit.autopsy.imagegallery.grouping.GroupKey;
-import org.sleuthkit.autopsy.imagegallery.grouping.GroupSortBy;
 import org.sleuthkit.autopsy.imagegallery.grouping.GroupViewState;
-import org.sleuthkit.datamodel.TskCoreException;
 
 /**
  * Display two trees. one shows all folders (groups) and calls out folders with
  * images. the user can select folders with images to see them in the main
  * GroupPane The other shows folders with hash set hits.
+ *
+ * //TODO: there is too much code duplication between the navTree and the
+ * hashTree. Extract the common code to some new class.
  */
 public class NavPanel extends TabPane {
 
@@ -170,24 +167,15 @@ public class NavPanel extends TabPane {
                     removeFromNavTree(g);
                     removeFromHashTree(g);
                 }
-                if(change.wasPermutated()){
+                if (change.wasPermutated()) {
                     // Handle this afterward
                     wasPermuted = true;
                 }
             }
 
-            if(wasPermuted){
+            if (wasPermuted) {
-                // Remove everything and add it again in the new order
+                rebuildTrees();
-                for(DrawableGroup g:controller.getGroupManager().getAnalyzedGroups()){
+
-                    removeFromNavTree(g);
-                    removeFromHashTree(g);
-                }
-                for(DrawableGroup g:controller.getGroupManager().getAnalyzedGroups()){
-                    insertIntoNavTree(g);
-                    if (g.getFilesWithHashSetHitsCount() > 0) {
-                        insertIntoHashTree(g);
-                    }
-                }
             }
         });
 
@@ -205,6 +193,27 @@ public class NavPanel extends TabPane {
         });
     }
 
+    private void rebuildTrees() {
+        navTreeRoot = new GroupTreeItem("", null, sortByBox.getSelectionModel().selectedItemProperty().get());
+        hashTreeRoot = new GroupTreeItem("", null, sortByBox.getSelectionModel().selectedItemProperty().get());
+
+        ObservableList<DrawableGroup> groups = controller.getGroupManager().getAnalyzedGroups();
+
+        for (DrawableGroup g : groups) {
+            insertIntoNavTree(g);
+            if (g.getFilesWithHashSetHitsCount() > 0) {
+                insertIntoHashTree(g);
+            }
+        }
+
+        Platform.runLater(() -> {
+            navTree.setRoot(navTreeRoot);
+            navTreeRoot.setExpanded(true);
+            hashTree.setRoot(hashTreeRoot);
+            hashTreeRoot.setExpanded(true);
+        });
+    }
+
     private void updateControllersGroup() {
         final TreeItem<TreeNode> selectedItem = activeTreeProperty.get().getSelectionModel().getSelectedItem();
         if (selectedItem != null && selectedItem.getValue() != null && selectedItem.getValue().getGroup() != null) {
@@ -216,11 +225,6 @@ public class NavPanel extends TabPane {
         hashTreeRoot.resortChildren(sortByBox.getSelectionModel().getSelectedItem());
     }
 
-    private void insertIntoHashTree(DrawableGroup g) {
-        initHashTree();
-        hashTreeRoot.insert(g.groupKey.getValueDisplayName(), g, false);
-    }
-
     /**
      * Set the tree to the passed in group
      *
@@ -235,10 +239,13 @@ public class NavPanel extends TabPane {
 
         if (treeItemForGroup != null) {
             /* When we used to run the below code on the FX thread, it would
-             * get into infinite loops when the next group button was pressed quickly
+             * get into infinite loops when the next group button was pressed
-             * because the udpates became out of order and History could not keep
+             * quickly because the udpates became out of order and History could
-             * track of what was current.  Currently (4/2/15), this method is 
+             * not
-             * already on the FX thread, so it is OK. */
+             * keep track of what was current.
+             *
+             * Currently (4/2/15), this method is already on the FX thread, so
+             * it is OK. */
             //Platform.runLater(() -> {
             TreeItem<TreeNode> ti = treeItemForGroup;
             while (ti != null) {
@@ -250,11 +257,10 @@ public class NavPanel extends TabPane {
                 activeTreeProperty.get().getSelectionModel().select(treeItemForGroup);
                 activeTreeProperty.get().scrollTo(row);
             }
-            //});
+            //});   //end Platform.runLater
         }
     }
 
-    @SuppressWarnings("fallthrough")
     private static List<String> groupingToPath(DrawableGroup g) {
 
         if (g.groupKey.getAttribute() == DrawableAttribute.PATH) {
@@ -269,11 +275,14 @@ public class NavPanel extends TabPane {
         }
     }
 
+    private void insertIntoHashTree(DrawableGroup g) {
+        initHashTree();
+        hashTreeRoot.insert(groupingToPath(g), g, false);
+    }
+
     private void insertIntoNavTree(DrawableGroup g) {
         initNavTree();
-        List<String> path = groupingToPath(g);
+        navTreeRoot.insert(groupingToPath(g), g, true);
-
-        navTreeRoot.insert(path, g, true);
     }
 
     private void removeFromNavTree(DrawableGroup g) {
@@ -313,22 +322,4 @@ public class NavPanel extends TabPane {
             });
         }
     }
-
-    //these are not used anymore, but could be usefull at some point
-    //TODO: remove them or find a use and undeprecate
-    @Deprecated
-    private void rebuildNavTree() {
-        navTreeRoot = new GroupTreeItem("", null, sortByBox.getSelectionModel().selectedItemProperty().get());
-
-        ObservableList<DrawableGroup> groups = controller.getGroupManager().getAnalyzedGroups();
-
-        for (DrawableGroup g : groups) {
-            insertIntoNavTree(g);
-        }
-
-        Platform.runLater(() -> {
-            navTree.setRoot(navTreeRoot);
-            navTreeRoot.setExpanded(true);
-        });
-    }
 }